Posts Tagged ‘taxonomy’
“The study of taxonomy in its broadest sense is probably the oldest branch of biology or natural history as well as the basis for all the other branches, since the first step in obtaining any knowledge of things about us is to discriminate between them and to learn to recognize them”*…
The Holotypic Occlupanid Research Group (HORG) is a tongue-in-cheek non-profit organization founded in 1994 by John Daniel (a visual effects artist with a background in invertibrate zoology). It playfully researches and classifies plastic bread clips, calling them “occlupanids,” as if they were a species in a scientific taxonomy (Kingdom: Plasticae), documenting their diverse forms from around the world. They treat these common, often-ignored objects as fascinating organisms, collecting specimens and creating a taxonomy and a database of their shapes, colors, and “species”…
This site contains several years of research in the classification of occlupanids. These small objects are everywhere, dotting supermarket aisles and sidewalks with an impressive array of form and color. The Holotypic Occlupanid Research Group has taken on the mantle of classifying this most common, yet most puzzling, member of phylum Plasticae…
Occlupanids are generally found as parasitoids on bagged pastries in supermarkets, hardware stores, and other large commercial establishments. Their fascinating and complex life cycle is unfortunately severely under-researched. What is known is that they take nourishment from the plastic sacs that surround the bagged product, not the product itself, as was previously thought. Notable exceptions to this habit are those living off rubber bands and on analog watch hands.
In most species, they often situate themselves toward the center of the plastic bag, holding in the contents. This leads to speculation that the relationship may be more symbiotic than purely parasitic.
Their stunning diversity and mysterious habits have entranced many a respectable scientist into studying, collecting, and cataloging specimens late into the night.
This site contains several years of research in the classification of occlupanids. For those of you who do not consume sliced bread, occlupanids do not form an important part of your life. For the rest of the world, These small objects are everywhere, dotting supermarket aisles and sidewalks with an impressive array of form and color.
The Holotypic Occlupanid Research Group has taken on the mantle of classifying this most common, yet most puzzling, member of phylum Plasticae.
They’ve even created a handy, free print-your-own set of cut-out identifcation placards “for the excitable amateur scientists out there who want to start their own collection!”
Ready, set, browse: HORG- Holotypic Occlupanid Research Group
For more on HORG, see here and here.
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As we contemplate classification, we might send insightful birthday greetings to a man who revolutionized the understanding of the taxonomy of his field, Harold Varmus; he was born on this date in 1939. A microbiologist and medical doctor, he shared (with J. Michael Bishop) the 1989 Nobel Prize in Physiology or Medicine for discovery of the cellular origin of retroviral oncogenes— a discovery that led to great strides in the understanding, diagnosis, and treatment of a variety of cancers.
“Elementary, my dear Watson”*…
From Keith Enevoldsen, “The Periodic Table of the Elements, in Pictures and Words“: a periodic table with a drawing of one of the element’s main human uses or natural occurrences. Larger (and zoomable) version here.
There’s another, textual (and more informationally- rich) version here.
* widely attributed to, but never actuallly “said,” by Sherlock Holmes in any of Arthur Conan Doyle’s stories
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As we untangle taxonomy, we might send “eureka”-filled birthday greetings to Hieronymous Theodor Richter; he was born on this date in 1824. In 1863, he co-discovered indium (with Ferdinand Reich).
“An understanding of the natural world, and what’s in it is a source of not only great curiosity but great fulfillment”*…
Ah yes, but in what does that understanding consist? John Long considers the competing frameworks of Linnaeus and Buffon…
The modern science biography must hold back no punches in its mission to represent the subject’s life, equally celebrating their great works while including their personal shortcomings.
Jürgen Neffe’s Einstein: A Biography (2005) and Dava Sobel’s The Elements of Marie Curie (2024) are wonderful examples of this style. Such books succeed in clearly explaining the complex science of their subject’s work for non-scientific readers, enabling a deep appreciation of their achievements and bringing them to life as rounded, flawed humans.
The modern science biography must hold back no punches in its mission to represent the subject’s life, equally celebrating their great works while including their personal shortcomings.
Jürgen Neffe’s Einstein: A Biography (2005) and Dava Sobel’s The Elements of Marie Curie (2024) are wonderful examples of this style. Such books succeed in clearly explaining the complex science of their subject’s work for non-scientific readers, enabling a deep appreciation of their achievements and bringing them to life as rounded, flawed humans.
Jason Roberts’ Every Living Thing – The Great and Deadly Race to Know all Life is another of these rare works. This engrossing, precisely researched book focuses on two central characters born in the same year: Carl Linnaeus (1707-1778), a Swede, and Frenchman Georges-Louis LeClerc, the Compte de Buffon (1707-1788), better known as just Buffon.
Roberts’ book won the 2025 Pulitzer Prize for biography. His writing pulls the reader effortlessly through the story, revealing delightful, unexpected twists and turns in the two men’s complex and disparate lives. Each worked diligently to reach a level of global notoriety for their many published books. Both are revered in the natural history world today.
Linnaeus, a biologist and physician, is known for his system of hierarchical classification: how all living things comprise a genus and species, (we humans are Homo sapiens), which fit into families, orders, classes and so on. (A good many intermediate ranks were added later). While his work has been hugely influential, Linnaeus is portrayed by Roberts at times as being lazy, vain and unethical.
Linnaeus was primarily driven to be the first to name new species. Buffon was working on a grand thesis of how all life’s organisms function and are related to one another. A wealthy count who inherited a vast fortune at the age of ten, Buffon trained as a lawyer but became fascinated by the trees that grew in his large garden.
Buffon is best known today for his extensive books on natural history and works on mathematics and cosmology. He calculated the Earth was much older than the Bible predicted and that life sprung from unorganised matter. He explored the relationships between organisms rather than how they were classified. His core work formed the basis for modern evolutionary theory.
Why was all this important? At the time, the task of classifying plants was vital to the growing economies of nations. Travellers to the far reaches of the globe brought back examples of economically valuable new species, like plant foods, medicinal plants or beautiful ornamental specimens.
The author’s central thesis is Linnaeus was not as brilliant as history paints him and Buffon was a far greater genius for his day.
Where does genius come from, Roberts asks? Is it inherent by birth, grown from an inspiring education, or is it something within that is nurtured by passion?
Both these brilliant men who made a lasting mark on science came from not very inspiring families. Nor did they excel at school or university. This story shows success in academic work is not just about intellect, but intimately tied to the ethics and morality of doing research…
Eminently worth reading in full: “How do we understand life on Earth? A prize-winning biography charts the tension between two types of science ‘genius’” from @theconversation.com.
* David Attenborough, who also observed, “We moved from being a part of nature to being apart from nature.”
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As we noodle on knowing, we might send birthday greetings to Gregor Mendel; he was born on this date in 1822 (though some sources give the date as July 20). A botanist, geneticist, and monk, he pioneered in the study of heredity.
Mendel spent his adult life with the Augustinian monastery in Brunn, where as a plant experimenter, he was the first to lay the mathematical foundation of the science of genetics, in what came to be called Mendelism. Over the period 1856-63, Mendel grew and analyzed over 28,000 pea plants. He carefully studied for each their plant height, pod shape, pod color, flower position, seed color, seed shape and flower color. He made two very important generalizations from his pea experiments, known today as the Laws of Heredity, and coined the genetic terms recessiveness and dominance. He read a paper on his studies in 1865 to the Brünn Society for Natural Sciences in Moravia– but it lay unappreciated until 1900.
“The greatest obstacle to discovery is not ignorance – it is the illusion of knowledge”*…
Learning from the past: as John Thornhill explains in his consideration of Jason Roberts‘ Every Living Thing, the rivalry between Buffon and Linnaeus has lessons about disrupters and exploitation…
The aristocratic French polymath Georges-Louis Leclerc, Comte de Buffon chose a good year to die: 1788. Reflecting his status as a star of the Enlightenment and author of 35 popular volumes on natural history, Buffon’s funeral carriage drawn by 14 horses was watched by an estimated 20,000 mourners as it processed through Paris. A grateful Louis XVI had earlier erected a statue of a heroic Buffon in the Jardin du Roi, over which the naturalist had masterfully presided. “All nature bows to his genius,” the inscription read.
The next year the French Revolution erupted. As a symbol of the ancien regime, Buffon was denounced as an enemy of progress, his estates in Burgundy seized, and his son, known as the Buffonet, guillotined. In further insult to his memory, zealous revolutionaries marched through the king’s gardens (nowadays known as the Jardin des Plantes) with a bust of Buffon’s great rival, Carl Linnaeus. They hailed the Swedish scientific revolutionary as a true man of the people.
The intense intellectual rivalry between Buffon and Linnaeus, which still resonates today, is fascinatingly told by the author Jason Roberts in his book Every Living Thing, my holiday reading while staying near Buffon’s birthplace in Burgundy. Natural history, like all history, might be written by the victors, as Roberts argues. And for a long time, Linnaeus’s highly influential, but flawed, views held sway. But the book makes a sympathetic case for the further rehabilitation of the much-maligned Buffon.
The two men were, as Roberts writes, exact contemporaries and polar opposites. While Linnaeus obsessed about classifying all biological species into neat categories with fixed attributes and Latin names (Homo sapiens, for example), Buffon emphasised the vast diversity and constantly changing nature of every living thing.
In Roberts’s telling, Linnaeus emerges as a brilliant but ruthless dogmatist, who ignored inconvenient facts that did not fit his theories and gave birth to racial pseudoscience. But it was Buffon’s painstaking investigations and acceptance of complexity that helped inspire the evolutionary theories of Charles Darwin, who later acknowledged that the Frenchman’s ideas were “laughably like mine”.
In two aspects, at least, this 18th-century scientific clash rhymes with our times. The first is to show how intellectual knowledge can often be a source of financial gain. The discovery of crops and commodities in other parts of the world and the development of new methods of cultivation had a huge impact on the economy in that era. “All that is useful to man originates from these natural objects,” Linnaeus wrote. “In one word, it is the foundation of every industry.”
Great wealth was generated from trade in sugar, potatoes, coffee, tea and cochineal while Linnaeus himself explored ways of cultivating pineapples, strawberries and freshwater pearls.
“In many ways, the discipline of natural history in the 18th century was roughly analogous to technology today: a means of disrupting old markets, creating new ones, and generating fortunes in the process,” Roberts writes. As a former software engineer at Apple and a West Coast resident, Roberts knows the tech industry.
Then as now, the addition of fresh inputs into the economy — whether natural commodities back then or digital data today — can lead to astonishing progress, benefiting millions. But it can also lead to exploitation. As Roberts tells me in a telephone interview, it was the scaling up of the sugar industry in the West Indies that led to the slave trade. “Sometimes we think we are inventing the future when we are retrofitting the past,” he says.
The second resonance with today is the danger of believing we know more than we do. Roberts compares Buffon’s state of “curious unknowing” to the concept of “negative capability” described by the English poet John Keats. In a letter written in 1817, Keats argued that we should resist the temptation to explain away things we do not properly understand and accept “uncertainties, mysteries, doubts, without any irritable reaching after fact and reason.”
Armed today with instant access to information and smart machines, the temptation is to ascribe a rational order to everything, as Linnaeus did. But scientific progress depends on a humble acceptance of relative ignorance and a relentless study of the fabric of reality. The spooky nature of quantum mechanics would have blown Linnaeus’s mind. If Buffon still teaches us anything, it is to study the peculiarity of things as they are, not as we might wish them to be…
“What an epic 18th-century scientific row teaches us today,” @johnthornhillft on @itsJason in @FT (gift link)
Pair with “Frameworks” from Céline Henne (@celinehenne) “Knowledge is often a matter of discovery. But when the nature of an enquiry itself is at question, it is an act of creation.”
* Daniel J. Boorstin
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As we embrace the exceptions, we might send carefully-coded birthday greetings to John McCarthy; he was born on this date in 1927. An eminent computer and cognitive scientist– he was awarded both the Turning Prize and the National Medal of Science– McCarthy coined the phrase “artificial Intelligence” to describe the field of which he was a founder.
It was McCarthy’s 1979 article, “Ascribing Mental Qualities to Machines” (in which he wrote, “Machines as simple as thermostats can be said to have beliefs, and having beliefs seems to be a characteristic of most machines capable of problem solving performance”) that provoked John Searle‘s 1980 disagreement in the form of his famous Chinese Room Argument… provoking a broad debate that continues to this day.

“Take a good book to bed with you—books do not snore”*…
From Greg Ross, a helpful vocabulary lesson for those of us who would talk about people’s relationships with books…
rarissima
n. extremely rare books, manuscripts, or printsIn The Book Hunter (1863), John Hill Burton identifies five types of “persons who meddle with books”:
- “A bibliognoste, from the Greek, is one knowing in title-pages and colophons, and in editions; the place and year when printed; the presses whence issued; and all the minutiae of a book.”
- “A bibliographe is a describer of books and other literary arrangements.”
- “A bibliomane is an indiscriminate accumulator, who blunders faster than he buys, cock-brained and purse-heavy.”
- “A bibliophile, the lover of books, is the only one in the class who appears to read them for his own pleasure.”
- “A bibliotaphe buries his books, by keeping them under lock, or framing them in glass cases.”
These groups seem to have been proposed by French librarian Jean Joseph Rive. Bibliographer Gabriel Peignot added four more:
- bibliolyte, a destroyer of books
- bibliologue, one who discourses about books
- bibliotacte, a classifier of books
- bibliopée, “‘l’art d’écrire ou de composer des livres,’ or, as the unlearned would say, the function of an author.”…
For the bibliophiles among us: “In a Word,” from Futility Closet.
(Image above: source)
* Thea Dorn
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As we love our labels, we might send eerie birthday greetings to Howard Phillips Lovecraft; he was born on this date in 1890. The creator of the Cthulhu Mythos, he was a pioneer of weird, science, fantasy, and horror fiction. H.P. Lovecraft was almost unknown in his lifetime, but has become one of the most influential writers of the Twentieth Century– Jorge Luis Borges, Joyce Carol Oates, and Stephen King, among many other writers, comic artists, and filmmakers, have all proclaimed their indebtedness.










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