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Posts Tagged ‘punctuated equilibrium

“The most important factor in survival is neither intelligence nor strength but adaptability”*…

A close-up image of a nautilus, showcasing its spiral shell and soft body in a vibrant underwater setting.
A new mathematical model showed that evolutionary bursts led to the emergence of almost all characteristic cephalopod traits such as tentacles.

Indeed. Scientists have accepted this precept since Charles Darwin‘s publication of Origin of the Species. But how– and at what pace– does that adaptation happen? From those earliest days, the assumption was that change/adaptation happened slowly, roughly evenly– gradually– over time.

But in 1972, paleontologists Niles Eldredge and Stephen Jay Gould published a landmark paper developing their theory and called it punctuated equilibria. Their paper built upon Ernst Mayr‘s model of geographic speciation, I. M. Lerner‘s theories of developmental and genetic homeostasis, and their own empirical research. Eldredge and Gould proposed that the degree of gradualism commonly attributed to Darwin is virtually nonexistent in the fossil record, and that stasis dominates the history of most fossil species. Rather, they argued, when significant evolutionary change occurs, it is generally restricted to rare and geologically rapid events of branching speciation called cladogenesis (the process by which a species splits into two distinct species, rather than one species gradually transforming into another).

Jake Buhler reports on recent work that confirms the punctuated equilibrium theory and adds more detail…

Over the last half-billion years, squid, octopuses and their kin have evolved much like a fireworks display, with long, anticipatory pauses interspersed with intense, explosive changes. The many-armed diversity of cephalopods is the result of the evolutionary rubber hitting the road right after lineages split into new species, and precious little of their evolution has been the slow accumulation of gradual change.

They aren’t alone. Sudden accelerations spring from the crooks of branches in evolutionary trees, across many scales of life — seemingly wherever there’s a branching system of inherited modifications — in a dynamic not examined in traditional evolutionary models.

That’s the perspective emerging from a new mathematical framework (opens a new tab) published in Proceedings of the Royal Society B that describes the pace of evolutionary change. The new model, part of a roughly 50-year-long reimagining of evolution’s tempo, is rooted in the concept of punctuated equilibrium, which was introduced by the paleontologists Niles Eldredge and Stephen Jay Gould in 1972.

“Species would just sit still in the fossil record for millions of years, and then all of a sudden — bang! — they would turn into something else,” explained Mark Pagel, an evolutionary biologist at the University of Reading in the United Kingdom.

Punctuated equilibrium was initially a controversial proposal. The theory diverged from the dominant, century-long view that evolution adhered to a slow, steady pace of Darwinian gradualism, in which species incrementally and almost imperceptibly developed into new ones. It opened the confounding possibility that there was a discontinuity between the selection processes behind the microevolutionary changes that occur within a population and those driving the long-term, broad-scale changes that take place higher than the species level, known as macroevolution.

In the decades since, researchers have continued to debate these views as they’ve gathered more data: Paleontologists have accumulated fossil datasets tracing macroevolutionary changes in ancient lineages, while molecular biologists have reconstructed microevolution on a more compressed timescale — in DNA and the proteins they encode.

Now there are enough datasets to more fully test the theories of evolutionary change. Recently, a team of scientists blended insights from several evolutionary models with new methods to build a mathematical framework that better captures real evolutionary processes. When the team applied their tools to a selection of evolutionary datasets (including their own data from research into an ancient protein family), they found that evolutionary spikes weren’t just common, but somewhat predictably clustered at the forks in the evolutionary tree.

Their model showed that proteins contort themselves into new iterations more rapidly around the time they diverge from each other. Human languages twist and recast themselves at the bifurcations in their own family tree. Cephalopods’ soft bodies sprout arms and bloom with suckers at these same splits.

The new study adds to previous support for the punctuated equilibrium phenomenon, said Pagel, who wasn’t involved in the project. However, the rapid evolutionary behavior isn’t a unique process separate from natural selection, as Eldredge and Gould suggested, but rather the result of periods of extremely rapid adaptation propelling evolutionary change.

“This is really a rather beautiful story in the philosophy of science,” Pagel said…

Read on for the fascinating story of the updated evolutionary model shows that living systems evolve in a split-and-hit-the-gas dynamic, where new lineages appear in sudden bursts rather than during a long marathon of gradual changes: “The Sudden Surges That Forge Evolutionary Trees,” from @jakebuehler.bsky.social‬ in @quantamagazine.bsky.social‬.

Given the strains that the Antropocene is putting on our environment, this could be timely…

* Charles Darwin

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As we dissect development, we might spare a thought for Barabara McClintock; she died on this date in 1992. A cytogeneticist, she is regarded as one of the most important figures in the history of genetics. In the 1940s and 50s McClintock’s work on the cytogenetics of maize led her to theorize that genes are transposable – they can move around – on and between chromosomes. McClintock drew this inference by observing changing patterns of coloration in maize kernels over generations of controlled crosses. The idea that genes could move did not seem to fit with what was then known about genes, but improved molecular techniques of the late 1970s and early 1980s allowed other scientists to confirm her discovery. She was awarded the 1983 Nobel Prize in Physiology or Medicine, the first American woman to win an unshared Nobel Prize.

For more on McClintock’s work and its legacy, see here and here.

Black and white photo of a woman with glasses working in a laboratory, using a microscope and examining samples.

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Written by (Roughly) Daily

September 3, 2025 at 1:00 am

“For you formed my inward parts; you knitted me together in my mother’s womb. I praise you, for I am fearfully and wonderfully made.”*…

DNA is indisputably important to biological development. But, Alfonso Martinez Arias argues, far from being a blueprint for an organism, genes are mere tools used by life’s true expert builders: cells…

… Over the past century, scientists have discovered a material explanation for the source of life, one that needs no divine intervention and provides a thread across eons of time for all beings that exist or have ever existed: deoxyribonucleic acid — DNA. While there is little doubt that genes have something to do with what we are and how we come to be, it is difficult to answer precisely the question of what their exact role in all of this is.

A closer look at how genes work and what they can accomplish, compared to what they are said to achieve, casts doubt on the assertion that the genome in particular contains an “operating manual” for us or any other living creature. When it comes to the creation of organisms, we’ve overlooked — or, more accurately, forgotten — another force. The origin and power of that force are cells.

What makes you and me individual human beings is not a unique set of DNA but instead a unique organization of cells and their activities…

A fascinating essay, adapted from Martinez Arias’ forthcoming book, The Master Builder- How the New Science of the Cell Is Rewriting the Story of Life: “Cells, Not DNA, Are The Master Architects Of Life,” in @NoemaMag.

[Image above: source]

* Psalm 139: 13–14

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As we delve into design, we might send insightful birthday greetings to Ernst Mayr; he was born on this date in 1904. A  taxonomist, tropical explorer, ornithologist, philosopher of biology, and historian of science, he is best remembered as one of the 20th century’s leading evolutionary biologists. His work contributed to the conceptual revolution that led to the modern evolutionary synthesis of Mendelian genetics, systematics, and Darwinian evolution, and to the development of the biological species concept.

His theory of peripatric speciation (a more precise form of allopatric speciation which he advanced), based on his work on birds, is still considered a leading mode of speciation, and was the theoretical underpinning for the theory of punctuated equilibrium, proposed by Niles Eldredge and Stephen Jay Gould. Mayr is sometimes credited with inventing modern philosophy of biology, particularly the part related to evolutionary biology, which he distinguished from physics due to evolutionary biology’s introduction of (natural) history into science.

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“The body is our general medium for having a world”*…

Leonardo’s Vitruvian Man

The biggest component in any human, filling 61 percent of available space, is oxygen. It may seem a touch counterintuitive that we are almost two-thirds composed of an odorless gas. The reason we are not light and bouncy like a balloon is that the oxygen is mostly bound up with hydrogen (which accounts for another 10 percent of you) to make water — and water, as you will know if you have ever tried to move a wading pool or just walked around in really wet clothes, is surprisingly heavy. It is a little ironic that two of the lightest things in nature, oxygen and hydrogen, when combined form one of the heaviest, but that’s nature for you. Oxygen and hydrogen are also two of the cheaper elements within you. All of your oxygen will set you back just $14 and your hydrogen a little over $26 (assuming you are about the size of Benedict Cumberbatch). Your nitrogen (2.6 percent of you) is a better value still at just forty cents for a body’s worth. But after that it gets pretty expensive.

You need about thirty pounds of carbon, and that will cost you $69,550, according to the Royal Society of Chemistry. (They were using only the most purified forms of everything. The RSC would not make a human with cheap stuff.) Calcium, phosphorus, and potassium, though needed in much smaller amounts, would between them set you back a further $73,800. Most of the rest is even more expensive per unit of volume, but fortunately only needed in microscopic amounts.

Thorium costs over $3,000 per gram but constitutes just 0.0000001 percent of you, so you can buy a body’s worth for thirty-three cents. All the tin you require can be yours for six cents, while zirconium and niobium will cost you just three cents apiece. The 0.000000007 percent of you that is samarium isn’t apparently worth charging for at all. It’s logged in the RSC accounts as costing $0.00.

Of the fifty-nine elements found within us, twenty-four are traditionally known as essential elements, because we really cannot do without them. The rest are something of a mixed bag. Some are clearly beneficial, some may be beneficial but we are not sure in what ways yet, others are neither harmful nor beneficial but are just along for the ride as it were, and a few are just bad news altogether. Cadmium, for instance, is the twenty-third most common element in the body, constituting 0.1 percent of your bulk, but it is seriously toxic. We have it in us not because our body craves it but because it gets into plants from the soil and then into us when we eat the plants. If you are from North America, you probably ingest about eighty micrograms of cadmium a day, and no part of it does you any good at all.

A surprising amount of what goes on at this elemental level is still being worked out. Pluck almost any cell from your body, and it will have a million or more selenium atoms in it, yet until recently nobody had any idea what they were there for. We now know that selenium makes two vital enzymes, deficiency in which has been linked to hypertension, arthritis, anemia, some cancers, and even, possibly, reduced sperm counts. So, clearly it is a good idea to get some selenium inside you (it is found particularly in nuts, whole wheat bread, and fish), but at the same time if you take in too much you can irremediably poison your liver. As with so much in life, getting the balances right is a delicate business.

Altogether, according to the RSC, the full cost of building a new human being, using the obliging Benedict Cumberbatch as a template, would be a very precise $151,578.46. … That said, in 2012 Nova, the long-running science program on PBS, did an exactly equivalent analysis for an episode called ‘Hunting the Elements’ and came up with a figure of $168 for the value of the fundamental components within the human body…

An excerpt from Bill Bryson’s The Body: A Guide for Occupants, via the ever-illuminating Delanceyplace.com: “How much, in materials, would it cost to build a human body?

* Maurice Merleau-Ponty, Phenomenology of Perception

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As we take our vitamins, we might we might send dynamically-evolved birthday greetings to Stephen Jay Gould; he was born on this date in 1941.  One of the most influential and widely read writers of popular science in his generation (e.g., Ever Since Darwin, The Panda’s Thumb), Gould was a highly-respected academic paleontologist, evolutionary biologist, and historian of science.  With Niles Eldridge, he developed the theory of “punctuated equilibrium,” an explanation of evolution that suggests (in contrast with the gradualism that was prevalent until then) that most evolution is marked by long periods of evolutionary stability, which are interrupted– “punctuated”– by rare instances of branching evolution (c.f., the Burgess Shale).

Scientists have power by virtue of the respect commanded by the discipline… We live with poets and politicians, preachers and philosophers. All have their ways of knowing, and all are valid in their proper domain. The world is too complex and interesting for one way to hold all the answers.

Stephen Jay Gould, Bully for Brontosaurus: Reflections in Natural History

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Names to all cattle, and to the fowl of the air, and to every beast of the field…

 

A murder of crows

From E.O. Wilson’s Encyclopedia of Life, via the TED Blog, a collection of very amusing (and altogether appropriate) animal group names: “Animals that travel in schools, towers, bloats and more.”

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As we noodle on nomenclature, we might send dynamically-evolved birthday greetings to Stephen Jay Gould; he was born on this date in 1941.  One of the most influential and widely read writers of popular science in his generation (e.g., Ever Since Darwin, The Panda’s Thumb), Gould was a highly-respected academic paleontologist, evolutionary biologist, and historian of science.  With Niles Eldridge, he developed the theory of “punctuated equilibrium,” an explanation of evolution that suggests (in contrast with the gradualism that was prevalent until then) that most evolution is marked by long periods of evolutionary stability, which are interrupted– “punctuated”– by rare instances of branching evolution (c.f., the Burgess Shale).

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Written by (Roughly) Daily

September 10, 2012 at 1:01 am