(Roughly) Daily

Posts Tagged ‘landscape’

“In the beginning there is the stem cell; it is the origin of an organism’s life”*…

Illustration depicting a fluctuating surface with wavy lines and a small sphere resting on top, representing concepts of energy or surface tension.
Waddington’s classic drawing of the epigenetic landscape. A ball, representing a pluripotent cell or population, is poised to roll downhill into valleys, each of which represent a specialized cell type, such as a blood cell, liver cell, or brain cell. From The Strategy of the Genes by C.H. Waddington

C.H. Waddington’s powerful image of embryonic stem cells specializing on a rolling landscape has captivated biologists since the 1950s. As Philip Ball reports, experimental data is finally confirming– and complicating– his visionary ideas…

By the middle of the 20th century, it had begun to seem that biology was almost solved. Charles Darwin’s theory of evolution by natural selection explained how organisms change and adapt. The modern science of genetics showed how it works at the molecular scale. Genes governing the traits of organisms get passed down from parent to offspring, and random mutations create the variations from which natural selection picks the “fittest.” Natural selection and genetics fitted together in what the biologist Julian Huxley christened “the modern synthesis” in his 1942 book). Once it was shown in 1953 that the genes are encoded by DNA, the rest of biology looked like little more than piecing together details.

But not everyone was satisfied. The British biologist Conrad Hal Waddington), known to his friends and colleagues as Wad, thought this focus on genes was all very well. But it wasn’t clear to him, or anyone else, exactly how genes shape the forms and features of organisms — how they reliably generate all the different tissues of the body, in all the right places, during embryonic development. Around the same time that Huxley unveiled the modern synthesis, Waddington presented a novel picture of how this might unfold.

He visualized the developmental process as a landscape with hills and valleys that split every so often like those in a river network. At the very top of the highest hill he imagined a ball, which represented a population of cells in their earliest embryonic form — what we now call stem or pluripotent cells, which have the potential to become any cell type. The progression of the cells towards their fates — to become, say, skin cells, muscle cells, or nerve cells — is like the ball rolling downhill through the landscape.

When the ball reaches a branching point (bifurcation), the model’s “gravity” pulls it to one track or the other: In scientific terms, it must differentiate. Through a particular sequence of such branching decisions, Waddington argued, cells specialize into their mature types, or fates, each expressing a particular set of genes. The cells are restricted to a small number of well-defined states because they are “canalized,” in Waddington’s lexicon: trapped and channeled by the sides of the valley. In this way, a limited number of cell types reliably arise from the activity of an army of genes.

Waddington’s landscape has been “remarkably useful as a conceptual scaffold,” said James Briscoe, a developmental biologist at the Francis Crick Institute in London. “The core ideas — that development is progressive, that cell states are distinct, that bifurcations represent [cell] fate decisions, that canalization implies robustness — all survive.”

“There’s so much richness to some of the concepts Waddington was trying to share,” said Susanne Rafelski, a biochemist at the Institute for Stem Cell and Regenerative Medicine in Seattle.

But the concept was more of a visual metaphor than a representation of an actual biological process. Or so it seemed. In the past several years, researchers have mapped out the real topography of cell-state spaces — in effect, Waddington’s landscapes — from experimental data collected from many thousands of cells over the course of embryonic development. Those analyses are revealing that development is not a mere readout of a genetic program, but rather a dynamic process in which communities of cells build themselves, and the very landscape they navigate, by mutual negotiation and interaction, into an organism.

This cartography of development is now helping researchers understand how identical cells in the early embryo develop into the distinct tissues and cell types of a complex organism. This matters enormously for regenerative medicine and stem-cell engineering, Briscoe said: “If you understand the landscape topology and know where the bifurcations lie, you can in principle design methods that steer cell populations to desired states with precision, rather than by trial and error.”

Waddington’s metaphor, then, could be the key to understanding and reshaping possibilities for what cells, tissues, and embryos can be…

Read on: “How Does Life Unfold? A Landscape Metaphor Comes Into Its Own.” from @philipcball.bsky.social in @quantamagazine.org.

* Stewart Sell

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As we appreciate adaptability, we might send healing birthday greetings to Robert Peter Gale; he was born on this date in 1945. A physician and medical researcher, he conducted important research into leukemia and other bone marrow disorders (e.g., aplastic anemia). Gale was a a pioneer in bone marrow transplantation and co-founded the International Bone Marrow Registry. But he is perhaps most widely known for his assistance to foreign governments in treating radiation victims – to the Soviet Union (1986) after the Chernobyl disaster and to Brazil (1987) following an accident in Goiania. As a specialist in bone marrow transplants, he volunteered to treat Chernobyl victims and was invited by Mikhail Gorbachev to travel with a group to Moscow immediately after the April 1986 accident. He performed bone marrow transplants on 13 Chernobyl victims (though many of the highly exposed Chernobyl survivors have since died from latent radiation effects).

A speaker presenting at a conference, standing behind a podium with a logo, while a display screen shows distances from the Earth to the Moon and the Sun.

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“I think of two landscapes- one outside the self, the other within”*…

 

Marcus Gheeraerts the Elder’s allegory of iconoclasm, ca.1566

Although commonplace today, the landscape as a distinct category in painting only really began to establish itself in Western art during the Renaissance, a period in which natural views began to make their way to the fore of focus, no longer merely backgrounds to human figures. Perhaps an interesting quirk of this “transition” were the images which seemed to fuse the two: anthropomorphic landscapes. These images — particularly where landscapes are given the form of human heads — appear to be somewhat of a meme…

Currier and Ives print showing a young man and a young woman looking through an opening in a wall (alternatively, a human skull)

More of the story, and more (and larger) examples, at “The Art of Hidden Faces: Anthropomorphic Landscapes.”

* Barry Lopez

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As we put a human face on Nature, we might send dramatic birthday greetings to Elaine de Kooning; she was born on this date in 1918.  While she was overshadowed in the public view by her husband, Willem de Kooning, for much of her career, she was an important and influential Abstract Expressionist and Figurative Expressionist painter in the post-World War II era, and an editor of Art News.

Her portrait of John F. Kennedy (National Portrait Gallery)

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March 12, 2016 at 1:01 am

“‘Meow’ means ‘woof’ in cat”*…

 

In cliff-side houses like these, some Malian villagers speak an enigmatic anti-language originally designed to fool slave-traders

Criminals, conspirators, fugitives, outcasts– throughout history, they’ve all often spoken “The secret ‘anti-languages’ you’re not supposed to know.”

[Update:  further to “I use a whole lot of half-assed semicolons; there was one of them just now; that was a semicolon after ‘semicolons,’ and another one after ‘now’*…,” this wonderful variation, via @PhelimKine]

* George Carlin

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As we watch our tongues, we might send breath-taking birthday greetings to the man who spoke the secret language of the environment, Ansel Easton Adams; he was born on this date in 1902.  A co-founder of Group f/64 (with other masters like Edward Weston, Willard Van Dyke, and Imogen Cunningham), his black-and-white landscape photographs of the American West, especially Yosemite National Park, helped define landscape photography and establish photography as a fine art.

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February 20, 2016 at 1:01 am

“What’s a Multiverse?”*…

 

Last fall, a hand-picked group of the world’s top theoretical physicists received an invitation to a conference about the multiverse, a subject to which many of them had devoted the majority of their careers. Invitations like these were nothing unusual in their line of work. What was unusual was this conference was not being hosted by a university or research institute, but rather by a Scottish Duke.

And its organizer was not a physicist, but a landscape architect by the name of Charles Jencks.

The physicists were surprised to learn that Jencks had spent the past three years bringing their cosmological theories to life in the form of a massive land installation carved into the hills and pastures of the Nith Valley in southwest Scotland. It was titled “Crawick Multiverse” after the village where it was built, and its features, according to the brochure accompanying the invitation, included a Supercluster of Galaxies, twin Milky Way and Andromeda spiral mounds, the Sun Amphitheater (which seats 5,000), a Comet Walk, Black Holes (“in two different phases”), an Omphalos (a boulder-limned grotto symbolizing Earth’s “mythic navel” [pictured above]) and of course, the multiverse itself…

A panoramic painting of Crawick.

More at “The Duke, The Landscape Architect, and the World’s Most Ambitious Plan to Bring the Cosmos to Earth.”

* Penny: What’s a multiverse?

   Sheldon: GET HER OUT OF HERE!

– Big Bang Theory

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As we note, with Rebecca Solnit, that a path is simply a prior interpretation of the best way to traverse a landscape, we might send perpetual birthday greetings to Jean Bernard Léon Foucault; he was born on this date in 1819.  A physicist who made an early measurement of the speed of light, discovered eddy currents, and is credited with naming the gyroscope (although he did not invent it), Foucault is best remembered for the (eponymously-named) Foucault’s Pendulum– a long and heavy pendulum suspended from the roof of the Panthéon in Paris– demonstrating the effects of the Earth’s rotation.  In fact, essentially the same experimental approach had been used by Vincenzo Viviani as early as 1661; but it was Foucault’s work that caught the public imagination: within years of his 1851 experiment, the were “Foucault’s Pendulums” hanging– and attracting crowds–in major cities across Europe and America.

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September 18, 2015 at 1:01 am

“Meanwhile, fears of universal disaster sank to an all time low over the world”*…

 

Tsunami #8 Indonesia

New York photographer Sasha Bezzubov uses a variety of conceptual methods to point viewers to larger phenomena that underlie visible landscapes…  Bezzubov’s series Things Fall Apart (2001-07), depicts the aftermath of natural disasters in India, Indonesia, Thailand and the United States. The pictures function in part as documents of these tragic events, but the series as a whole does not convey enough specific information to be useful as documentary work. Rather, the images blend together to form a more generalized, and aestheticized, portrayal of destruction, following the long artistic tradition of appreciating the melancholy beauty of ruins and nature’s destructive power. That tradition is closely tied to the idea of the sublime — a sensation of beauty and terror in the face of nature’s power — prevalent in 18th and early 19th century philosophy and landscape art, and often understood as a way of experiencing the divine. Nature’s power is certainly evident in Bezzubov’s images, but the knowledge that human-caused climate change has increased the frequency and strength of catastrophic storms reshapes our sense of the sublime…

Hurricane #4, Florida

Read more at Design Observer…

* Isaac Asimov

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As we take stock, we might recall that it was on this date in 1993 that the World Trade Center in New York was attacked for the first time:  a nitrate-hydrogen truck bomb was detonated below the North Tower.  The blast shook the 110 story tower, causing the collapse of several floors in the underground garage, and tore a hole in the ceiling of an adjoining subway; six people were killed, another thousand, injured.  The attack is believed to have been planned by Khalid Sheikh Mohammed, a member of what we now know as al-Qaeda, and was executed by a group who were apprehended, tried, and convicted the following year.

Underground damage after the bombing

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February 26, 2014 at 1:01 am